Kolb AW and CR Brandt. Genomic nucleotide-based distance analysis for delimiting Old World monkey derived Herpes simplex virus species. BMC Genomics. 2020 Jun 26; 21(1): 436. doi: 10.1186/s12864-020-06847-w. PMID: 32590937. Alignments, ZIP file, 4.6 mb
Phylogenetic and recombination analysis of the Herpesvirus genus Varicellovirus. BMC Genomics. 2017 Nov 21; 18(1): 887. doi: 10.1186/s12864-017-4283-4. PMID: 29157201. Alignments, ZIP file, 19 mb
Lee K, Kolb AW, Larsen IV, Craven M, Brandt CR. Mapping murine corneal neovascularization and weight loss virulence determinants in the HSV-1 genome and the detection of an epistatic interaction between the UL and IRS/US regions. J Virol. 2016. Aug 26; 90(18): 8115-31. doi: 10.1128/JVI.00821-16. PMID: 27384650.
Supplemental data, ZIP file, 4.1 mb
Kolb AW, Lee K, Larsen I, Craven M, Brandt CR. Quantitative trait locus based virulence determinant mapping of the HSV-1 genome in murine ocular infection: Genes involved in viral regulatory and innate immune networks contribute to virulence. PLoS Pathog. 2016 Mar 10; 12(3): e1005499. doi: 10.1371/journal.ppat.1005499. PMID: 26962864. Supplemental data, ZIP file, 1.7 mb
Lee K, Kolb AW, Sverchkov Y, Cuellar JA, Craven M, Brandt CR. Recombination analysis of Herpes simplex virus Type 1 reveals a bias towards GC content and the inverted repeat regions. J Virol. 2015;89(14):7214-23. doi: 10.1128/JVI.00880-15. PMID: 25926637. Supplemental data, ZIP file, 7.9 mb
Kolb AW, Larsen IV, Cuellar JA, Brandt CR. Genomic, phylogenetic, and recombinational characterization of Herpes simplex virus 2 strains. J Virol. 2015 Jun 15; 89(12): 6427-34. doi: 10.1128/JVI.00416-15 . PMID: 25855744. Supplemental data, ZIP file, 1.0 mb
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