Data Sets

Genomic Nucleotide-Based Distance Analysis for Delimiting Old World Monkey Derived Herpes Simplex Virus Species.  Kolb AW and CR Brandt.  BMC Genomics. 2020 Jun 26; 21(1):  436. doi: 10.1186/s12864-020-06847-w. PMID: 32590937.  Alignments, ZIP file, 4.6 mb

Phylogenetic and Recombination Analysis of the Herpesvirus Genus Varicellovirus.
Kolb AW, Lewin AC, Moeller Trane R, McLellan GJ, Brandt CR.  BMC Genomics.  2017 Nov 21; 18(1):  887.  doi: 10.1186/s12864-017-4283-4.  PMID: 29157201
Alignments, ZIP file, 19 mb

Mapping Murine Corneal Neovascularization and Weight Loss Virulence Determinants in the HSV-1 Genome and the Detection of an Epistatic Interaction between the UL and IRS/US Regions.
Lee K, Kolb AW, Larsen IV, Craven M, Brandt CR. J Virol.  2016.  Aug 26; 90(18):  8115-31. doi: 10.1128/JVI.00821-16.
Supplemental data, ZIP file, 4.1 mb

Quantitative Trait Locus Based Virulence Determinant Mapping of the HSV-1 Genome in Murine Ocular Infection: Genes Involved in Viral Regulatory and Innate Immune Networks Contribute to Virulence.
Kolb AW, Lee K, Larsen I, Craven M, Brandt CR.  PLoS Pathog. 2016 Mar 10; 12(3):  e1005499. doi: 10.1371
Supplemental data, ZIP file, 1.7 mb

Recombination Analysis of Herpes Simplex Virus Type 1 Reveals a Bias towards GC Content and the Inverted Repeat Regions.
Lee K, Kolb AW, Sverchkov Y, Cuellar JA, Craven M, Brandt CR.  J Virol. 2015 Apr 29. pii: JVI.00880-15.
Supplemental data, ZIP file, 7.9 mb

Genomic, Phylogenetic, and Recombinational Characterization of Herpes Simplex Virus 2 Strains
Kolb AW, Larsen IV, Cuellar JA, Brandt CR.  J Virol. 2015 Jun 15; 89(12):  6427-34. doi: 10.1128/JVI.00416-15. Epub 2015 Apr 8.
Supplemental data, ZIP file, 1.0 mb

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